PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00119g08004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 280aa    MW: 30336.7 Da    PI: 9.3073
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00119g08004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.8e-3970128462
                    zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                               + lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGa+rnvPvGgg+r+nk+s+
  Niben101Scf00119g08004.1  70 AGLKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGAMRNVPVGGGCRRNKRSK 128
                               6789****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3352121IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.69372126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MIFSSFPVYL DHPNLQQLQQ SDHQQGNPAL EDRQLSSHQP PAQAGGGLGS IRPGSMVHRA  60
RMAKIPLAEA GLKCPRCDST NTKFCYFNNY SLSQPRHFCK SCRRYWTRGG AMRNVPVGGG  120
CRRNKRSKSS NNDNNISKSA GGQMGNSNVI VSTSASPSSC SMEIIGHQFS QPSTQFTPLM  180
AAFHNLNNYG AGFGTEMGFQ IANNNNNNLL PSLAANFEHI TEGPIEASNG VSQVSPPVKM  240
ESNSTKQFLG SLENNQYWGG ANSWTGFSGL NNSSTTSHIL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777580.11e-148PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLK4D9L41e-104K4D9L4_SOLLC; Uncharacterized protein
STRINGSolyc11g066050.1.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-43OBF-binding protein 3